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DHBP synthase RibB-like alpha/beta domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821220, updated on 18-Sep-2024

Summary

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Official Full Name
DHBP synthase RibB-like alpha/beta domain-containing protein
Primary source
TAIR:AT3G01920
Locus tag
AT3G01920
See related
Araport:AT3G01920
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28J7.25
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Genomic context

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Location:
chromosome: 3
Exon count:
8
Sequence:
Chromosome: 3; NC_003074.8 (317336..319121)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene SWIB/MDM2 domain superfamily protein Neighboring gene cytochrome P450, family 94, subfamily B, polypeptide 2 Neighboring gene sulfite oxidase Neighboring gene Major facilitator superfamily protein Neighboring gene ncRNA Neighboring gene transmembrane protein, putative (DUF 3339)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001337363.1
NM_111058.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
DHBP synthase RibB-like alpha/beta domain-containing protein
NP_566156.2
  • DHBP synthase RibB-like alpha/beta domain; CONTAINS InterPro DOMAIN/s: Sua5/YciO/YrdC/YwlC (InterPro:IPR004388), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945), Sua5/YciO/YrdC, N-terminal (InterPro:IPR006070); Has 7227 Blast hits to 7227 proteins in 2277 species: Archae - 193; Bacteria - 5396; Metazoa - 127; Fungi - 76; Plants - 77; Viruses - 0; Other Eukaryotes - 1358 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    317336..319121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111058.5 → NP_566156.2  DHBP synthase RibB-like alpha/beta domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566156.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VBZ0, A0A5S9X8D9, A0A654FDR8, Q9SGI3
    Conserved Domains (1) summary
    pfam01300
    Location:88 → 281
    Sua5_yciO_yrdC; Telomere recombination

  2. NM_001337363.1 → NP_001325721.1  DHBP synthase RibB-like alpha/beta domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VBZ0, A0A1I9LM38, A0A5S9X8D9
Nucleotide Protein
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