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Phototropic-responsive NPH3 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821246, updated on 18-Sep-2024

Summary

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Official Full Name
Phototropic-responsive NPH3 family protein
Primary source
TAIR:AT3G03510
Locus tag
AT3G03510
See related
Araport:AT3G03510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T21P5.7; T21P5_7
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (836039..837707)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene TatD related DNase Neighboring gene ncRNA Neighboring gene non-specific phospholipase C3 Neighboring gene non-specific phospholipase C4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_111222.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Phototropic-responsive NPH3 family protein
NP_187001.2
  • Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G17580.1); Has 834 Blast hits to 794 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 832; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    836039..837707
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111222.2 → NP_187001.2  Phototropic-responsive NPH3 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187001.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q1PET5, Q9SRQ5
    Conserved Domains (2) summary
    pfam03000
    Location:107 → 337
    NPH3; NPH3 family
    cl02518
    Location:2 → 39
    BTB; BTB/POZ domain
Nucleotide Protein
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