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Ypt/Rab-GAP domain of gyp1p superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821261, updated on 18-Sep-2024

Summary

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Official Full Name
Ypt/Rab-GAP domain of gyp1p superfamily protein
Primary source
TAIR:AT3G02460
Locus tag
AT3G02460
See related
Araport:AT3G02460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16B3.9; F16B3_9
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Genomic context

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Location:
chromosome: 3
Exon count:
8
Sequence:
Chromosome: 3; NC_003074.8 (505434..508723)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene TRICHOME BIREFRINGENCE-LIKE 20 Neighboring gene cell division protein ftsH Neighboring gene S-adenosylmethionine decarboxylase Neighboring gene Late embryogenesis abundant protein (LEA) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001337409.1
NM_001337410.1
NM_001337411.1
NM_111113.4
NM_180172.2

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ypt/Rab-GAP domain of gyp1p superfamily protein
NP_566172.1
  • Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: plant adhesion molecule 1 (TAIR:AT5G15930.1); Has 5276 Blast hits to 5263 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 2708; Fungi - 1087; Plants - 526; Viruses - 0; Other Eukaryotes - 955 (source: NCBI BLink).
NP_850503.1
  • Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: plant adhesion molecule 1 (TAIR:AT5G15930.1); Has 4815 Blast hits to 4807 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 2496; Fungi - 964; Plants - 519; Viruses - 0; Other Eukaryotes - 836 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    505434..508723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111113.4 → NP_566172.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566172.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VGW5, A0A384L1W6, A0A7G2ELS2, Q8LAF3
    Conserved Domains (1) summary
    smart00164
    Location:85 → 299
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  2. NM_001337410.1 → NP_001325592.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LLQ0, Q9M894
    Conserved Domains (1) summary
    smart00164
    Location:85 → 299
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  3. NM_001337409.1 → NP_001325591.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LLP9, A0A7G2ELS2

  4. NM_001337411.1 → NP_001325593.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LLQ1, Q9M894
    Conserved Domains (1) summary
    smart00164
    Location:85 → 278
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  5. NM_180172.2 → NP_850503.1  Ypt/Rab-GAP domain of gyp1p superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850503.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2ELS2, F4J9K1
    Conserved Domains (2) summary
    smart00164
    Location:85 → 278
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    pfam08619
    Location:1 → 70
    Nha1_C; Alkali metal cation/H+ antiporter Nha1 C terminus
Nucleotide Protein
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