U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

lysine-tRNA ligase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821278, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
lysine-tRNA ligase
Primary source
TAIR:AT3G01060
Locus tag
AT3G01060
See related
Araport:AT3G01060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T4P13.26; T4P13_26
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (16631..18909, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene membrane-anchored ubiquitin-fold protein 1 precursor Neighboring gene ncRNA Neighboring gene early nodulin-like protein 16 Neighboring gene WRKY DNA-binding protein 58

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis. Li G, et al. Nat Cell Biol, 2011 May. PMID 21499259
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_110971.4
NM_202471.2
NM_202472.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within circadian rhythm IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
lysine-tRNA ligase
NP_566129.1
  • unknown protein; Has 640 Blast hits to 638 proteins in 201 species: Archae - 0; Bacteria - 293; Metazoa - 0; Fungi - 71; Plants - 72; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).
NP_974200.2
  • unknown protein; Has 637 Blast hits to 635 proteins in 201 species: Archae - 0; Bacteria - 291; Metazoa - 0; Fungi - 72; Plants - 72; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).
NP_974201.1
  • unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    16631..18909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_110971.4 → NP_566129.1  lysine-tRNA ligase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566129.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V7S8, A0A384LK34, Q8LAR6, Q8RWI4
    Conserved Domains (1) summary
    pfam14234
    Location:101 → 394
    DUF4336; Domain of unknown function (DUF4336)

  2. NM_202472.1 → NP_974201.1  lysine-tRNA ligase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974201.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IYD7
    Conserved Domains (1) summary
    pfam14234
    Location:101 → 355
    DUF4336; Domain of unknown function (DUF4336)

  3. NM_202471.2 → NP_974200.2  lysine-tRNA ligase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974200.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IYD5, Q8LAR6
    Conserved Domains (1) summary
    pfam14234
    Location:101 → 386
    DUF4336; Domain of unknown function (DUF4336)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.