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LNG2 longifolia2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821279, updated on 18-Sep-2024

Summary

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Official Symbol
LNG2
Official Full Name
longifolia2
Primary source
TAIR:AT3G02170
Locus tag
AT3G02170
See related
Araport:AT3G02170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1C9.4; LONGIFOLIA2; TON1 Recruiting Motif 1; TRM1
Summary
Encodes LONGIFOLIA2 (LNG2). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG2 homologue LNG1 (At5g15580) has similar function.
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Genomic context

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See LNG2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (396012..399960, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene plastid transcription factor 1 Neighboring gene Bromodomain transcription factor Neighboring gene SPIRAL1-like3 Neighboring gene Ribosomal protein L39 family protein Neighboring gene Proteasome component (PCI) domain protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. LONGIFOLIA1 and LONGIFOLIA2, two homologous genes, regulate longitudinal cell elongation in Arabidopsis. Lee YK, et al. Development, 2006 Nov. PMID 17038516
  2. The Arabidopsis TRM1-TON1 interaction reveals a recruitment network common to plant cortical microtubule arrays and eukaryotic centrosomes. Drevensek S, et al. Plant Cell, 2012 Jan. PMID 22286137, Free PMC Article
  3. Functionally redundant LNG3 and LNG4 genes regulate turgor-driven polar cell elongation through activation of XTH17 and XTH24. Lee YK, et al. Plant Mol Biol, 2018 May. PMID 29616436
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001337383.1
NM_001337384.1
NM_111084.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables microtubule binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of monopolar cell growth IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of monopolar cell growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within unidimensional cell growth IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
colocalizes_with microtubule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
longifolia2
NP_566165.2
  • LONGIFOLIA2 (LNG2); BEST Arabidopsis thaliana protein match is: longifolia1 (TAIR:AT5G15580.1); Has 1276 Blast hits to 643 proteins in 119 species: Archae - 0; Bacteria - 21; Metazoa - 420; Fungi - 51; Plants - 161; Viruses - 6; Other Eukaryotes - 617 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    396012..399960 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111084.4 → NP_566165.2  longifolia2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566165.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LD57, Q940B7, Q9S823
    UniProtKB/TrEMBL
    A0A178V8A8, A0A5S9X9E0
    Conserved Domains (1) summary
    pfam14309
    Location:722 → 901
    DUF4378; Domain of unknown function (DUF4378)

  2. NM_001337383.1 → NP_001327087.1  longifolia2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LR84

  3. NM_001337384.1 → NP_001327088.1  longifolia2 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LR85
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9S823.1

Gene LinkOut

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