U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RNA-binding ASCH domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821284, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
RNA-binding ASCH domain protein
Primary source
TAIR:AT3G03320
Locus tag
AT3G03320
See related
Araport:AT3G03320
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T21P5.26; T21P5_26
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
8
Sequence:
Chromosome: 3; NC_003074.8 (781715..783464)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene dicer-like 2 Neighboring gene Calcineurin-like metallo-phosphoesterase superfamily protein Neighboring gene lecithin:cholesterol acyltransferase 3 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene LUC7 related protein Neighboring gene cold-regulated protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_111203.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
RNA-binding ASCH domain protein
NP_566202.1
  • RNA-binding ASCH domain protein; CONTAINS InterPro DOMAIN/s: ProFAR isomerase-like (InterPro:IPR010759), ASCH domain (InterPro:IPR007374); BEST Arabidopsis thaliana protein match is: RNA-binding ASCH domain protein (TAIR:AT2G43465.1); Has 111 Blast hits to 111 proteins in 31 species: Archae - 41; Bacteria - 13; Metazoa - 2; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    781715..783464
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111203.2 → NP_566202.1  RNA-binding ASCH domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566202.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F3P9, A0A7G2EF85, Q9SRN6
    Conserved Domains (1) summary
    cd06555
    Location:107 → 210
    ASCH_PF0470_like; ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools