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DEAD/DEAH box helicase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821294, updated on 18-Sep-2024

Summary

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Official Full Name
DEAD/DEAH box helicase
Primary source
TAIR:AT3G02060
Locus tag
AT3G02060
See related
Araport:AT3G02060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1C9.16; F1C9_16
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Genomic context

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Location:
chromosome: 3
Exon count:
14
Sequence:
Chromosome: 3; NC_003074.8 (354360..358833)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene transferase Neighboring gene senescence-related gene 3 Neighboring gene K+ uptake transporter 3 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Cysteine proteinases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001084623.1
NM_111072.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DEAD/DEAH box helicase
NP_001078092.1
  • DEAD/DEAH box helicase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription-repair-coupling factor (InterPro:IPR005118), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Transcription factor CarD (InterPro:IPR003711), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT2G01440.1); Has 31156 Blast hits to 30938 proteins in 2896 species: Archae - 262; Bacteria - 19852; Metazoa - 1548; Fungi - 988; Plants - 649; Viruses - 13; Other Eukaryotes - 7844 (source: NCBI BLink).
NP_566160.1
  • DEAD/DEAH box helicase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription-repair-coupling factor (InterPro:IPR005118), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Transcription factor CarD (InterPro:IPR003711), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT2G01440.1); Has 31166 Blast hits to 30948 proteins in 2896 species: Archae - 262; Bacteria - 19852; Metazoa - 1558; Fungi - 988; Plants - 649; Viruses - 13; Other Eukaryotes - 7844 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    354360..358833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001337379.1 → NP_001326158.1  DEAD/DEAH box helicase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JFJ3, Q8H0S6, Q94JY9, Q9SGA4
    UniProtKB/TrEMBL
    A0A178VHR3, A0A5S9X8M5, A0A654F4U7
    Conserved Domains (1) summary
    COG1197
    Location:137 → 770
    Mfd; Transcription-repair coupling factor (superfamily II helicase) [Replication, recombination and repair, Transcription]

  2. NM_111072.2 → NP_566160.1  DEAD/DEAH box helicase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566160.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JFJ3, Q8H0S6, Q94JY9, Q9SGA4
    UniProtKB/TrEMBL
    A0A178VHR3, A0A5S9X8M5, A0A654F4U7
    Conserved Domains (1) summary
    COG1197
    Location:137 → 770
    Mfd; Transcription-repair coupling factor (superfamily II helicase) [Replication, recombination and repair, Transcription]

  3. NM_001084623.1 → NP_001078092.1  DEAD/DEAH box helicase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078092.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VHR3
    Conserved Domains (4) summary
    smart00487
    Location:261 → 457
    DEXDc; DEAD-like helicases superfamily
    smart01058
    Location:144 → 241
    CarD_TRCF; CarD-like/TRCF domain
    cd00079
    Location:455 → 585
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam00270
    Location:270 → 433
    DEAD; DEAD/DEAH box helicase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4JFJ3.1

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