Phosphoglycerate mutase-like family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Phosphoglycerate mutase-like family protein
Primary source: TAIR:AT3G01310
Locus tag: AT3G01310
See related: Araport:AT3G01310
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: Arabidopsis homolog of yeast Vip1 1; AtVIP1; T22N4.6; T22N4_6; T4P13.1; T4P13_1
Summary: Encodes a myo-inositol hexakisphosphate kinase.
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 31

Sequence:: Chromosome: 3; NC_003074.8 (93995..102010, complement)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Here the authors report that deletion of two diphosphoinositol pentakisphosphate kinases VIH1/2 impairs plant growth and leads to constitutive phosphate (Pi) starvation responses.[VIH2]
Title: Two bifunctional inositol pyrophosphate kinases/phosphatases control plant phosphate homeostasis.
AtVip1 (At3g01310) is differentially expressed in plant tissues and play a role in inositol pyrophosphate synthesis
Title: Two inositol hexakisphosphate kinases drive inositol pyrophosphate synthesis in plants.

Submit: New GeneRIF Correction

General gene information

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NM_001035537.3

Supported by ESTs:

NM_001337329.1

Supported by ESTs:

NM_110997.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables 5-diphosphoinositol pentakisphosphate 1-kinase activity	IEA Inferred from Electronic Annotation more info
enables 5-diphosphoinositol pentakisphosphate 1-kinase activity	IMP Inferred from Mutant Phenotype more info	PubMed
enables diphosphoinositol pentakisphosphate kinase activity	IMP Inferred from Mutant Phenotype more info	PubMed
enables inositol hexakisphosphate 1-kinase activity	IEA Inferred from Electronic Annotation more info
enables inositol hexakisphosphate 3-kinase activity	IEA Inferred from Electronic Annotation more info
enables inositol hexakisphosphate 5-kinase activity	IEA Inferred from Electronic Annotation more info
enables inositol hexakisphosphate kinase activity	IGI Inferred from Genetic Interaction more info	PubMed
enables inositol hexakisphosphate kinase activity	IMP Inferred from Mutant Phenotype more info	PubMed
enables inositol-1,3,4,5,6-pentakisphosphate kinase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within defense response to fungus	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in defense response to fungus	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in inositol metabolic process	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within inositol phosphate biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in inositol phosphate biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within jasmonic acid and ethylene-dependent systemic resistance	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in jasmonic acid and ethylene-dependent systemic resistance	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of antifungal innate immune response	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of defense response to insect	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of vitamin E biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	ISM Inferred from Sequence Model more info
located_in plasma membrane	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: Phosphoglycerate mutase-like family protein

NP_001030614.1

Phosphoglycerate mutase-like family protein; FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, acid phosphatase activity; INVOLVED IN: oxidation reduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP-grasp fold, RimK-type (InterPro:IPR013651), Histidine phosphatase superfamily, clade-2 (InterPro:IPR000560), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase-like family protein (TAIR:AT5G15070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NP_186780.3

Phosphoglycerate mutase-like family protein; FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, acid phosphatase activity; INVOLVED IN: oxidation reduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATP-grasp fold, RimK-type (InterPro:IPR013651), Histidine phosphatase superfamily, clade-2 (InterPro:IPR000560), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase-like family protein (TAIR:AT5G15070.1); Has 618 Blast hits to 482 proteins in 186 species: Archae - 0; Bacteria - 7; Metazoa - 225; Fungi - 193; Plants - 69; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

93995..102010 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001035537.3 → NP_001030614.1 Phosphoglycerate mutase-like family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001030614.1

Status: REVIEWED

UniProtKB/Swiss-Prot

F4J8C6, Q0WSV1, Q9MAD6, Q9SRH8

UniProtKB/TrEMBL

A0A178VBS2, A0A5S9X830

Conserved Domains (3) summary

pfam00328
Location:363 → 953

His_Phos_2; Histidine phosphatase superfamily (branch 2)

pfam18086
Location:14 → 103

PPIP5K2_N; Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain

cl17255
Location:103 → 294

CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain
NM_110997.5 → NP_186780.3 Phosphoglycerate mutase-like family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_186780.3

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VD31, A0A384LD83, A0A5S9X830, F4J8C7

Conserved Domains (3) summary

pfam00328
Location:369 → 959

His_Phos_2; Histidine phosphatase superfamily (branch 2)

pfam18086
Location:14 → 109

PPIP5K2_N; Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain

cl17255
Location:109 → 300

CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain
NM_001337329.1 → NP_001327831.1 Phosphoglycerate mutase-like family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VEL3, A0A1I9LTI6, A0A384L7F4, A0A5S9X830

Conserved Domains (3) summary

pfam00328
Location:334 → 924

His_Phos_2; Histidine phosphatase superfamily (branch 2)

pfam18086
Location:1 → 74

PPIP5K2_N; Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain

cl17255
Location:74 → 265

CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain