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hypothetical protein (DUF946) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821315, updated on 18-Sep-2024

Summary

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Official Full Name
hypothetical protein (DUF946)
Primary source
TAIR:AT3G01870
Locus tag
AT3G01870
See related
Araport:AT3G01870
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28J7.20; F28J7_20
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (305131..307226)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene uncharacterized protein Neighboring gene vacuolar sorting-associated protein (DUF946) Neighboring gene SWIB/MDM2 domain superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_111053.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hypothetical protein (DUF946)
NP_186836.1
  • Plant protein of unknown function (DUF946); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT3G01880.1); Has 265 Blast hits to 263 proteins in 69 species: Archae - 0; Bacteria - 17; Metazoa - 17; Fungi - 89; Plants - 141; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    305131..307226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111053.3 → NP_186836.1  hypothetical protein (DUF946) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_186836.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V6X9, A0A5S9X896, A0A654F387, Q9SGI4
    Conserved Domains (1) summary
    pfam06101
    Location:55 → 583
    DUF946; Plant protein of unknown function (DUF946)
Nucleotide Protein
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