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Translation elongation factor EF1B/ribosomal protein S6 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821407, updated on 18-Sep-2024

Summary

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Official Full Name
Translation elongation factor EF1B/ribosomal protein S6 family protein
Primary source
TAIR:AT3G18760
Locus tag
AT3G18760
See related
Araport:AT3G18760
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (6457677..6459725, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat (TPR)-containing protein Neighboring gene Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Neighboring gene with no lysine (K) kinase 6 Neighboring gene Autophagy-related protein 13 Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084712.1
NM_112762.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Translation elongation factor EF1B/ribosomal protein S6 family protein
NP_001078181.1
  • Translation elongation factor EF1B/ribosomal protein S6 family protein; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation; LOCATED IN: ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Ribosomal protein S6 (InterPro:IPR000529); Has 42 Blast hits to 42 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_566618.1
  • Translation elongation factor EF1B/ribosomal protein S6 family protein; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation; LOCATED IN: ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EF1B/ribosomal protein S6 (InterPro:IPR014717), Ribosomal protein S6 (InterPro:IPR000529); Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6457677..6459725 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112762.3 → NP_566618.1  Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566618.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VGN2, A0A384KBE6, Q9LSA1
    Conserved Domains (1) summary
    cd15465
    Location:3 → 96
    bS6_mito; Mitochondrial Ribosomal Protein (MRP) S6

  2. NM_001084712.1 → NP_001078181.1  Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078181.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8MRE5
    Conserved Domains (1) summary
    cd15465
    Location:3 → 91
    bS6_mito; Mitochondrial Ribosomal Protein (MRP) S6
Nucleotide Protein
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