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Nucleic acid-binding, OB-fold-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821421, updated on 18-Sep-2024

Summary

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Official Full Name
Nucleic acid-binding, OB-fold-like protein
Primary source
TAIR:AT3G18880
Locus tag
AT3G18880
See related
Araport:AT3G18880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (6509500..6510702)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene transducin family protein / WD-40 repeat family protein Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene ncRNA Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001338362.1
NM_112774.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Nucleic acid-binding, OB-fold-like protein
NP_188518.1
  • Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, bacterial-type (InterPro:IPR019984), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G49400.1); Has 7392 Blast hits to 7392 proteins in 2609 species: Archae - 117; Bacteria - 5271; Metazoa - 45; Fungi - 44; Plants - 105; Viruses - 0; Other Eukaryotes - 1810 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6509500..6510702
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112774.4 → NP_188518.1  Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188518.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VBE3, Q9LHN1
    Conserved Domains (1) summary
    pfam00366
    Location:6 → 73
    Ribosomal_S17; Ribosomal protein S17

  2. NM_001338362.1 → NP_001327490.1  Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VBE3, Q9LHN1
Nucleotide Protein
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