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RBP47B RNA-binding protein 47B [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821447, updated on 18-Sep-2024

Summary

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Official Symbol
RBP47B
Official Full Name
RNA-binding protein 47B
Primary source
TAIR:AT3G19130
Locus tag
AT3G19130
See related
Araport:AT3G19130
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATRBP47B; RNA-binding protein 47B
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Genomic context

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See RBP47B in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (6611182..6614107, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene PIF / Ping-Pong family of plant transposase Neighboring gene RING/U-box superfamily protein Neighboring gene KIP-related protein 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interaction of 2',3'-cAMP with Rbp47b Plays a Role in Stress Granule Formation. Kosmacz M, et al. Plant Physiol, 2018 May. PMID 29618637, Free PMC Article
  2. Tudor staphylococcal nuclease links formation of stress granules and processing bodies with mRNA catabolism in Arabidopsis. Gutierrez-Beltran E, et al. Plant Cell, 2015 Mar. PMID 25736060, Free PMC Article
  3. RBP45 and RBP47, two oligouridylate-specific hnRNP-like proteins interacting with poly(A)+ RNA in nuclei of plant cells. Lorković ZJ, et al. RNA, 2000 Nov. PMID 11105760, Free PMC Article
  4. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
  5. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Rbp47b, the key component of stress granules, was identified as a potential interacting partner of 2',3'-cAMP.
    Title: Interaction of 2',3'-cAMP with Rbp47b Plays a Role in Stress Granule Formation.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_112800.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables poly(A) binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to heat ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within stress granule assembly IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasmic stress granule ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 47B
NP_188544.1
  • RNA-binding protein 47B (RBP47B); FUNCTIONS IN: RNA binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 47A (TAIR:AT1G49600.1); Has 37628 Blast hits to 21966 proteins in 866 species: Archae - 14; Bacteria - 2376; Metazoa - 18486; Fungi - 4600; Plants - 6856; Viruses - 8; Other Eukaryotes - 5288 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6611182..6614107 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112800.4 → NP_188544.1  RNA-binding protein 47B [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188544.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WW84, Q8LFI9, Q9LJL7
    UniProtKB/TrEMBL
    A0A178VAC7, A0A5S9XDJ4, A0A654F9M7
    Conserved Domains (3) summary
    cd12344
    Location:109 → 189
    RRM1_SECp43_like; RNA recognition motif 1 (RRM1) found in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
    cd12345
    Location:201 → 280
    RRM2_SECp43_like; RNA recognition motif 2 (RRM2) found in tRNA selenocysteine-associated protein 1 (SECp43) and similar proteins
    cl17169
    Location:320 → 391
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0WW84.1

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