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Eukaryotic aspartyl protease family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821540, updated on 18-Sep-2024

Summary

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Official Full Name
Eukaryotic aspartyl protease family protein
Primary source
TAIR:AT3G20015
Locus tag
AT3G20015
See related
Araport:AT3G20015
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (6978477..6980523, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein Neighboring gene ncRNA Neighboring gene protein arginine methyltransferase 6 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_112892.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Eukaryotic aspartyl protease family protein
NP_188636.2
  • Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G18490.1); Has 3754 Blast hits to 3736 proteins in 332 species: Archae - 0; Bacteria - 0; Metazoa - 1064; Fungi - 524; Plants - 1996; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6978477..6980523 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112892.6 → NP_188636.2  Eukaryotic aspartyl protease family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188636.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LHE3
    UniProtKB/TrEMBL
    A0A178VJL3, A0A5S9XE16
    Conserved Domains (1) summary
    cd05472
    Location:130 → 470
    cnd41_like; Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LHE3.1

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