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extracellular ligand-gated ion channel protein (DUF3537) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821574, updated on 18-Sep-2024

Summary

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Official Full Name
extracellular ligand-gated ion channel protein (DUF3537)
Primary source
TAIR:AT3G20300
Locus tag
AT3G20300
See related
Araport:AT3G20300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (7079492..7082178, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene EPS15 homology domain 1 Neighboring gene ethylene response factor 7 Neighboring gene trigalactosyldiacylglycerol2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_112921.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
extracellular ligand-gated ion channel protein (DUF3537)
NP_566658.1
  • Protein of unknown function (DUF3537); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT1G50630.1); Has 143 Blast hits to 143 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    7079492..7082178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_112921.4 → NP_566658.1  extracellular ligand-gated ion channel protein (DUF3537) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566658.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V507, A0A384KZJ8, A0A5S9XE47, Q8VXV8
    Conserved Domains (1) summary
    pfam12056
    Location:41 → 436
    DUF3537; Protein of unknown function (DUF3537)
Nucleotide Protein
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