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zinc ion binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821674, updated on 18-Sep-2024

Summary

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Official Full Name
zinc ion binding protein
Primary source
TAIR:AT3G21210
Locus tag
AT3G21210
See related
Araport:AT3G21210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (7437964..7440826, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene autoinhibited Ca(2+)-ATPase 9 Neighboring gene O-fucosyltransferase family protein Neighboring gene ncRNA Neighboring gene proton gradient regulation 7 Neighboring gene ncRNA Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene MAP kinase kinase 5 Neighboring gene 4-coumarate:CoA ligase 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The pyruvate, orthophosphate dikinase regulatory proteins of Arabidopsis are both bifunctional and interact with the catalytic and nucleotide-binding domains of pyruvate, orthophosphate dikinase. Astley HM, et al. Plant J, 2011 Dec. PMID 21883547
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_113016.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
zinc ion binding protein
NP_188758.2
  • zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway, response to stress; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), UspA (InterPro:IPR006016), Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, PHD-type (InterPro:IPR001965), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G34480.1); Has 2127 Blast hits to 1070 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 2085; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    7437964..7440826 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113016.4 → NP_188758.2  zinc ion binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188758.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F981, Q84R08, Q9LU38
    Conserved Domains (2) summary
    pfam00582
    Location:15 → 132
    Usp; Universal stress protein family
    pfam03107
    Location:426 → 474
    C1_2; C1 domain
Nucleotide Protein
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