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LBO1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821696, updated on 18-Sep-2024

Summary

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Official Symbol
LBO1
Official Full Name
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Primary source
TAIR:AT3G21420
Locus tag
AT3G21420
See related
Araport:AT3G21420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
LATERAL BRANCHING OXIDOREDUCTASE 1
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Genomic context

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See LBO1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (7541384..7543560)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene ncRNA Neighboring gene DNA binding protein Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. LATERAL BRANCHING OXIDOREDUCTASE acts in the final stages of strigolactone biosynthesis in Arabidopsis. Brewer PB, et al. Proc Natl Acad Sci U S A, 2016 May 31. PMID 27194725, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_113037.5

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within_negative_effect regulation of secondary shoot formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within strigolactone biosynthetic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NP_566685.1
  • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: senescence-related gene 1 (TAIR:AT1G17020.1); Has 8953 Blast hits to 8890 proteins in 1011 species: Archae - 0; Bacteria - 1172; Metazoa - 113; Fungi - 1056; Plants - 5016; Viruses - 0; Other Eukaryotes - 1596 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    7541384..7543560
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113037.5 → NP_566685.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566685.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LIF4
    UniProtKB/TrEMBL
    A0A654FEQ3, A0A7G2EPE8
    Conserved Domains (1) summary
    PLN02758
    Location:1 → 362
    PLN02758; oxidoreductase, 2OG-Fe(II) oxygenase family protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LIF4.1

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