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ALY3 DNA binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821697, updated on 18-Sep-2024

Summary

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Official Symbol
ALY3
Official Full Name
DNA binding protein
Primary source
TAIR:AT3G21430
Locus tag
AT3G21430
See related
Araport:AT3G21430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ALWAYS EARLY 3; ARABIDOPSIS THALIANA ALWAYS EARLY 3; ATALY3
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Genomic context

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See ALY3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
21
Sequence:
Chromosome: 3; NC_003074.8 (7543772..7553682, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene Glutaredoxin family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Pfaff C, et al. Plant Physiol, 2018 May. PMID 29540591, Free PMC Article
  2. DREAM complex suppresses DNA methylation maintenance genes and precludes DNA hypermethylation. Ning YQ, et al. Nat Plants, 2020 Aug. PMID 32661276
  3. PAH-domain-specific interactions of the Arabidopsis transcription coregulator SIN3-LIKE1 (SNL1) with telomere-binding protein 1 and ALWAYS EARLY2 Myb-DNA binding factors. Bowen AJ, et al. J Mol Biol, 2010 Feb 5. PMID 19962994
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ALY3 plays a role in mRNA export and that the efficient nucleocytosolic transport of mRNAs is a requirement for proper plant growth and development.
    Title: ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001338532.1
NM_001338534.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of DRM complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
part_of transcription repressor complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DNA binding protein
NP_001319608.1
  • ALWAYS EARLY 3 (ALY3); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP; Myb-like DNA-binding domain (TAIR:AT3G05380.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    7543772..7553682 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338533.1 → NP_001325833.1  DNA binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LMF3, A0A5S9XEU4, A0A654F9C7
    Conserved Domains (2) summary
    pfam00249
    Location:47 → 81
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam06584
    Location:604 → 704
    DIRP

  2. NM_001338532.1 → NP_001319608.1  DNA binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WLW8, Q6A332, Q6NLT5, Q9LIF3
    UniProtKB/TrEMBL
    A0A654F9C7

  3. NM_001338534.1 → NP_001325832.1  DNA binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LMF3, A0A5S9XEU4, A0A654F9C7
    Conserved Domains (2) summary
    pfam00249
    Location:47 → 81
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam06584
    Location:604 → 704
    DIRP
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6A332.1

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