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APO4 APO RNA-binding protein (DUF794) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821728, updated on 18-Sep-2024

Summary

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Official Symbol
APO4
Official Full Name
APO RNA-binding protein (DUF794)
Primary source
TAIR:AT3G21740
Locus tag
AT3G21740
See related
Araport:AT3G21740
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ACCUMULATION OF PHOTOSYSTEM ONE 4
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Genomic context

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See APO4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (7662186..7664098, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene isocitrate lyase Neighboring gene Dihydroneopterin aldolase Neighboring gene UDP-glucosyl transferase 71B1 Neighboring gene ncRNA Neighboring gene UDP-Glycosyltransferase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_113069.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
APO RNA-binding protein (DUF794)
NP_188811.2
  • ACCUMULATION OF PHOTOSYSTEM ONE 4 (APO4); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF794) (TAIR:AT5G57930.2); Has 163 Blast hits to 121 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 163; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    7662186..7664098 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113069.3 → NP_188811.2  APO RNA-binding protein (DUF794) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188811.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GYN3, Q9LSZ0
    UniProtKB/TrEMBL
    A0A178VKA4, Q1EC50
    Conserved Domains (2) summary
    PLN00111
    Location:1 → 322
    PLN00111; accumulation of photosystem one; Provisional
    pfam05634
    Location:33 → 172
    APO_RNA-bind; APO RNA-binding
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LSZ0.2

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