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ATXR2 histone-lysine N-methyltransferase ATXR2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821736, updated on 18-Sep-2024

Summary

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Official Symbol
ATXR2
Official Full Name
histone-lysine N-methyltransferase ATXR2
Primary source
TAIR:AT3G21820
Locus tag
AT3G21820
See related
Araport:AT3G21820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
histone-lysine N-methyltransferase ATXR2; SDG36; SET DOMAIN PROTEIN 36
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Genomic context

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See ATXR2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Sequence:
Chromosome: 3; NC_003074.8 (7688434..7691567, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene SKP1-like 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ATXR2 as a core regulator of de novo root organogenesis. Lee K, et al. Plant Signal Behav, 2018 Mar 4. PMID 29517958, Free PMC Article
  2. Arabidopsis ATXR2 deposits H3K36me3 at the promoters of LBD genes to facilitate cellular dedifferentiation. Lee K, et al. Sci Signal, 2017 Nov 28. PMID 29184030
  3. JMJ30-mediated demethylation of H3K9me3 drives tissue identity changes to promote callus formation in Arabidopsis. Lee K, et al. Plant J, 2018 Sep. PMID 29923261
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_113077.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables histone H3K36 methyltransferase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within callus formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within_positive_effect epigenetic regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within_positive_effect lateral root formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within_positive_effect root regeneration IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
histone-lysine N-methyltransferase ATXR2
NP_188819.2
  • histone-lysine N-methyltransferase ATXR2 (ATXR2); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain group 37 (TAIR:AT2G17900.1); Has 1293 Blast hits to 1280 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 376; Fungi - 353; Plants - 295; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    7688434..7691567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113077.5 → NP_188819.2  histone-lysine N-methyltransferase ATXR2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188819.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5PP37, Q9LSY2
    UniProtKB/TrEMBL
    A0A5S9XEY4
    Conserved Domains (2) summary
    smart00317
    Location:388 → 443
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    pfam01753
    Location:173 → 203
    zf-MYND; MYND finger
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5PP37.1

Gene LinkOut

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