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LSH4 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821908, updated on 18-Sep-2024

Summary

Official Symbol
LSH4
Official Full Name
LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
Primary source
TAIR:AT3G23290
Locus tag
AT3G23290
See related
Araport:AT3G23290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
LIGHT SENSITIVE HYPOCOTYLS 4
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Genomic context

See LSH4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (8326628..8328557)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein Neighboring gene uncharacterized protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001084733.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in mRNA transcription ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in post-embryonic plant morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
NP_001078202.2
  • LIGHT SENSITIVE HYPOCOTYLS 4 (LSH4); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT2G31160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8326628..8328557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084733.2NP_001078202.2  LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078202.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6NNL1, Q9LW68
    UniProtKB/TrEMBL
    A0A178VHD2, A0A5S9XEV2, A0A654F9W4
    Conserved Domains (1) summary
    pfam04852
    Location:45161
    DUF640; Protein of unknown function (DUF640)