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RIC5 ROP-interactive CRIB motif-containing protein 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821919, updated on 18-Sep-2024

Summary

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Official Symbol
RIC5
Official Full Name
ROP-interactive CRIB motif-containing protein 5
Primary source
TAIR:AT3G23380
Locus tag
AT3G23380
See related
Araport:AT3G23380
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ROP-interactive CRIB motif-containing protein 5
Summary
encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Gene is expressed predominantly in inflorescence and flower tissue.
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Genomic context

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See RIC5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (8373375..8375098)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ENTH/VHS family protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene Zinc-binding ribosomal protein family protein Neighboring gene Plastid-lipid associated protein PAP / fibrillin family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PWWP-DOMAIN INTERACTOR OF POLYCOMBS1 Interacts with Polycomb-Group Proteins and Histones and Regulates Arabidopsis Flowering and Development. Hohenstatt ML, et al. Plant Cell, 2018 Jan. PMID 29330200, Free PMC Article
  2. A genome-wide analysis of Arabidopsis Rop-interactive CRIB motif-containing proteins that act as Rop GTPase targets. Wu G, et al. Plant Cell, 2001 Dec. PMID 11752391, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within pollen tube growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in apical plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ROP-interactive CRIB motif-containing protein 5
NP_001319624.1
  • ROP-interactive CRIB motif-containing protein 5 (RIC5); FUNCTIONS IN: protein binding; INVOLVED IN: pollen tube growth; LOCATED IN: apical plasma membrane; CONTAINS InterPro DOMAIN/s: PAK-box/P21-Rho-binding (InterPro:IPR000095); BEST Arabidopsis thaliana protein match is: ROP-interactive CRIB motif-containing protein 1 (TAIR:AT2G33460.1); Has 223 Blast hits to 223 proteins in 39 species: Archae - 0; Bacteria - 8; Metazoa - 27; Fungi - 6; Plants - 165; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8373375..8375098
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338629.1 → NP_001319624.1  ROP-interactive CRIB motif-containing protein 5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4J424, Q9LW58
    UniProtKB/TrEMBL
    A0A178VL33, A0A5S9XF16

  2. NM_113241.2 → NP_188980.1  ROP-interactive CRIB motif-containing protein 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_188980.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4J424, Q9LW58
    UniProtKB/TrEMBL
    A0A178VL33, A0A5S9XF16
    Conserved Domains (1) summary
    cl00113
    Location:28 → 66
    CRIB; PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the ...

  3. NM_001338630.1 → NP_001326715.1  ROP-interactive CRIB motif-containing protein 5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VL33, A0A1I9LQ47, A0A5S9XF16
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4J424.1

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