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SBP3 selenium-binding protein 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821962, updated on 18-Sep-2024

Summary

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Official Symbol
SBP3
Official Full Name
selenium-binding protein 3
Primary source
TAIR:AT3G23800
Locus tag
AT3G23800
See related
Araport:AT3G23800
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
selenium-binding protein 3
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Genomic context

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See SBP3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (8581446..8583987)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene nuclear RNA polymerase D2A Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene ralf-like 24 Neighboring gene S-adenosyl-l-homocysteine (SAH) hydrolase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Promoter analysis and functional implications of the selenium binding protein (SBP) gene family in Arabidopsis thaliana. Valassakis C, et al. J Plant Physiol, 2018 May-Jun. PMID 29574326
  2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001338655.1
NM_113284.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables selenium binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
selenium-binding protein 3
NP_189022.1
  • selenium-binding protein 3 (SBP3); FUNCTIONS IN: selenium binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), Selenium-binding protein (InterPro:IPR008826); BEST Arabidopsis thaliana protein match is: selenium-binding protein 1 (TAIR:AT4G14030.2); Has 910 Blast hits to 900 proteins in 207 species: Archae - 39; Bacteria - 194; Metazoa - 215; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 382 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8581446..8583987
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113284.3 → NP_189022.1  selenium-binding protein 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189022.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LK38
    UniProtKB/TrEMBL
    A0A178VEQ9, A0A5S9XF33
    Conserved Domains (1) summary
    pfam05694
    Location:13 → 480
    SBP56; 56kDa selenium binding protein (SBP56)

  2. NM_001338655.1 → NP_001327897.1  selenium-binding protein 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LTQ7, A0A5S9XF33
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LK38.1

Gene LinkOut

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