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DCD (Development and Cell Death) domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822327, updated on 18-Sep-2024

Summary

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Official Full Name
DCD (Development and Cell Death) domain protein
Primary source
TAIR:AT3G27090
Locus tag
AT3G27090
See related
Araport:AT3G27090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (9989511..9991903)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene translocase outer membrane 20-1 Neighboring gene translocase of outer membrane 20 kDa subunit 3 Neighboring gene miscRNA Neighboring gene transcription/mRNA export factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Abscisic acid employs NRP-dependent PIN2 vacuolar degradation to suppress auxin-mediated primary root elongation in Arabidopsis. Wu Y, et al. New Phytol, 2022 Jan. PMID 34618941
  2. Stress response proteins NRP1 and NRP2 are pro-survival factors that inhibit cell death during ER stress. Yang Y, et al. Plant Physiol, 2021 Nov 3. PMID 34618053, Free PMC Article
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Stress response proteins NRP1 and NRP2 are pro-survival factors that inhibit cell death during ER stress.
    Title: Stress response proteins NRP1 and NRP2 are pro-survival factors that inhibit cell death during ER stress.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001338852.1
NM_001338853.1
NM_113623.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in regulation of programmed cell death IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within regulation of protein catabolic process in the vacuole IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within response to endoplasmic reticulum stress IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
DCD (Development and Cell Death) domain protein
NP_189345.1
  • DCD (Development and Cell Death) domain protein; CONTAINS InterPro DOMAIN/s: Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT5G42050.1); Has 746 Blast hits to 671 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9989511..9991903
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113623.4 → NP_189345.1  DCD (Development and Cell Death) domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189345.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VF83, A0A384KRU4, A0A5S9XGD0, Q8LBT1, Q9LSC7
    Conserved Domains (1) summary
    smart00767
    Location:160 → 292
    DCD; DCD is a plant specific domain in proteins involved in development and programmed cell death

  2. NM_001338852.1 → NP_001325613.1  DCD (Development and Cell Death) domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VF83, A0A384KRU4, A0A5S9XGD0, Q8LBT1, Q9LSC7
    Conserved Domains (1) summary
    smart00767
    Location:160 → 292
    DCD; DCD is a plant specific domain in proteins involved in development and programmed cell death

  3. NM_001338853.1 → NP_001325614.1  DCD (Development and Cell Death) domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VF83, A0A384KRU4, A0A5S9XGD0, Q8LBT1, Q9LSC7
    Conserved Domains (1) summary
    smart00767
    Location:160 → 292
    DCD; DCD is a plant specific domain in proteins involved in development and programmed cell death
Nucleotide Protein
Heading Accession and Version

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