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zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822392, updated on 18-Sep-2024

Summary

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Official Full Name
zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
Primary source
TAIR:AT3G27700
Locus tag
AT3G27700
See related
Araport:AT3G27700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (10256895..10261975, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene photosystem II light harvesting complex protein 2.3 Neighboring gene RING/U-box superfamily protein Neighboring gene IBR domain containing protein Neighboring gene DNA helicase ROCK-N-ROLLERS

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  2. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_113686.3
NM_180677.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
NP_189407.2
  • zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 3790 Blast hits to 2562 proteins in 343 species: Archae - 8; Bacteria - 521; Metazoa - 625; Fungi - 291; Plants - 164; Viruses - 7; Other Eukaryotes - 2174 (source: NCBI BLink).
NP_851008.1
  • zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 3784 Blast hits to 2558 proteins in 341 species: Archae - 8; Bacteria - 515; Metazoa - 625; Fungi - 291; Plants - 164; Viruses - 7; Other Eukaryotes - 2174 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    10256895..10261975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180677.2 → NP_851008.1  zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851008.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WMA1, Q8W4G4, Q9LVX1
    UniProtKB/TrEMBL
    A0A178VI11, A0A384KQQ5, A0A7G2ER93, C0SVD1
    Conserved Domains (5) summary
    smart00356
    Location:206 → 227
    ZnF_C3H1; zinc finger
    COG0724
    Location:365 → 493
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    PRK12704
    Location:587 → 644
    PRK12704; phosphodiesterase; Provisional
    cd12257
    Location:437 → 508
    RRM1_RBM26_like; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cl17169
    Location:712 → 800
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. NM_113686.3 → NP_189407.2  zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189407.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WMA1, Q8W4G4, Q9LVX1
    UniProtKB/TrEMBL
    A0A178VI11, A0A384KQQ5, A0A7G2ER93, C0SVD1
    Conserved Domains (5) summary
    smart00356
    Location:206 → 227
    ZnF_C3H1; zinc finger
    COG0724
    Location:365 → 493
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    PRK12704
    Location:587 → 644
    PRK12704; phosphodiesterase; Provisional
    cd12257
    Location:437 → 508
    RRM1_RBM26_like; RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins
    cl17169
    Location:712 → 800
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LVX1.1

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