RPL12-A ribosomal protein L12-A [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: RPL12-A
Official Full Name: ribosomal protein L12-A
Primary source: TAIR:AT3G27830
Locus tag: AT3G27830
See related: Araport:AT3G27830
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: RIBOSOMAL PROTEIN L12; ribosomal protein L12-A; RPL12
Summary: 50S ribosomal protein L12-A
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Genomic context

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See RPL12-A in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 2

Sequence:: Chromosome: 3; NC_003074.8 (10318455..10319920)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The biological roles of SAUR62/75 and their RPL12 partners are critical in ribosomal pre-60S subunit assembly for efficient pollen tube elongation and subsequent fertilization.
Title: SMALL AUXIN UP RNA62/75 Are Required for the Translation of Transcripts Essential for Pollen Tube Growth.

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001338912.1

Supported by ESTs:

NM_113699.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables mRNA binding	IDA Inferred from Direct Assay more info	PubMed
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within translation	TAS Traceable Author Statement more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	HDA more info	PubMed
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in chloroplast envelope	HDA more info	PubMed
located_in chloroplast nucleoid	HDA more info	PubMed
located_in chloroplast stroma	HDA more info	PubMed
located_in chloroplast thylakoid membrane	HDA more info	PubMed
located_in cytosol	HDA more info	PubMed
located_in plasmodesma	HDA more info	PubMed
part_of plastid large ribosomal subunit	ISS Inferred from Sequence or Structural Similarity more info	PubMed
located_in thylakoid	HDA more info	PubMed

General protein information

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Preferred Names: ribosomal protein L12-A

NP_189421.1

ribosomal protein L12-A (RPL12-A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: cotyledon, juvenile leaf, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7/L12 (InterPro:IPR000206), Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, oligomerisation (InterPro:IPR008932), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: ribosomal protein L12-C (TAIR:AT3G27850.1); Has 8536 Blast hits to 8536 proteins in 2747 species: Archae - 0; Bacteria - 5673; Metazoa - 193; Fungi - 128; Plants - 248; Viruses - 0; Other Eukaryotes - 2294 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

10318455..10319920

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_113699.3 → NP_189421.1 ribosomal protein L12-A [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_189421.1

Status: REVIEWED

UniProtKB/Swiss-Prot

P36210

UniProtKB/TrEMBL

A0A178VJ19, A0A5S9XH20

Conserved Domains (1) summary

cd00387
Location:64 → 190

Ribosomal_L7_L12; Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of ...
NM_001338912.1 → NP_001326742.1 ribosomal protein L12-A [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

P36210

UniProtKB/TrEMBL

A0A178VJ19, A0A5S9XH20

Conserved Domains (1) summary

cd00387
Location:64 → 190

Ribosomal_L7_L12; Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of ...