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Oxoglutarate/iron-dependent oxygenase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822478, updated on 18-Sep-2024

Summary

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Official Full Name
Oxoglutarate/iron-dependent oxygenase
Primary source
TAIR:AT3G28480
Locus tag
AT3G28480
See related
Araport:AT3G28480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (10675986..10678388, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene methyltransferase Neighboring gene Duplicated homeodomain-like superfamily protein Neighboring gene Oxoglutarate/iron-dependent oxygenase Neighboring gene 60S acidic ribosomal protein family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski N, et al. Plant Physiol, 2014 Oct. PMID 25122472, Free PMC Article
  2. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
  3. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
  4. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
  5. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001203065.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
  
enables procollagen-proline 4-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in Golgi cis cisterna HDA PubMed 
located_in cytosol HDA PubMed 
located_in endosome HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole HDA PubMed 
located_in trans-Golgi network HDA PubMed 

General protein information

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Preferred Names
Oxoglutarate/iron-dependent oxygenase
NP_001189994.1
  • Oxoglutarate/iron-dependent oxygenase; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding; INVOLVED IN: oxidation reduction, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: Oxoglutarate/iron-dependent oxygenase (TAIR:AT3G28490.1).
NP_566838.1
  • Oxoglutarate/iron-dependent oxygenase; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding; INVOLVED IN: oxidation reduction, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: Oxoglutarate/iron-dependent oxygenase (TAIR:AT3G28490.1); Has 2540 Blast hits to 2497 proteins in 339 species: Archae - 0; Bacteria - 391; Metazoa - 1089; Fungi - 70; Plants - 415; Viruses - 17; Other Eukaryotes - 558 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    10675986..10678388 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113768.4 → NP_566838.1  Oxoglutarate/iron-dependent oxygenase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566838.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L970, Q8VZD7, Q9LSI6
    UniProtKB/TrEMBL
    A0A178VMI2
    Conserved Domains (1) summary
    PLN00052
    Location:51 → 316
    PLN00052; prolyl 4-hydroxylase; Provisional

  2. NM_001203065.1 → NP_001189994.1  Oxoglutarate/iron-dependent oxygenase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189994.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XGX9, F4J0A6
    Conserved Domains (1) summary
    PLN00052
    Location:51 → 324
    PLN00052; prolyl 4-hydroxylase; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L970.1

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