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3-dehydroquinate synthase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822508, updated on 18-Sep-2024

Summary

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Official Full Name
3-dehydroquinate synthase
Primary source
TAIR:AT3G28760
Locus tag
AT3G28760
See related
Araport:AT3G28760
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
10
Sequence:
Chromosome: 3; NC_003074.8 (10792933..10795385, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene high mobility group Neighboring gene Cytochrome P450 superfamily protein Neighboring gene uncharacterized protein Neighboring gene transmembrane protein, putative (DUF1216) Neighboring gene transmembrane protein, putative (DUF1216)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The female germ unit is essential for pollen tube funicular guidance in Arabidopsis thaliana. Wang X, et al. New Phytol, 2023 Apr. PMID 36527238
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The female germ unit is essential for pollen tube funicular guidance in Arabidopsis thaliana.
    Title: The female germ unit is essential for pollen tube funicular guidance in Arabidopsis thaliana.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_001035714.2
NM_113797.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 3-dehydroquinate synthase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
3-dehydroquinate synthase
NP_001030791.1
  • CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase, prokaryotic-type (InterPro:IPR002812); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_189518.2
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase, prokaryotic-type (InterPro:IPR002812); Has 390 Blast hits to 390 proteins in 131 species: Archae - 144; Bacteria - 105; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    10792933..10795385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001035714.2 → NP_001030791.1  3-dehydroquinate synthase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030791.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VLQ7, A0A654FCZ2, B9DHA5
    Conserved Domains (1) summary
    pfam01959
    Location:93 → 444
    DHQS; 3-dehydroquinate synthase II (EC 1.4.1.24)

  2. NM_113797.4 → NP_189518.2  3-dehydroquinate synthase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189518.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VLQ7, Q84JW0
    Conserved Domains (1) summary
    pfam01959
    Location:71 → 422
    DHQS; 3-dehydroquinate synthase (EC 4.6.1.3)
Nucleotide Protein
Heading Accession and Version

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