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transmembrane protein, putative (DUF1216) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822511, updated on 18-Sep-2024

Summary

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Official Full Name
transmembrane protein, putative (DUF1216)
Primary source
TAIR:AT3G28790
Locus tag
AT3G28790
See related
Araport:AT3G28790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (10813224..10815699, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF1216) Neighboring gene mutator-like transposase Neighboring gene pseudo Neighboring gene mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_113800.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transmembrane protein, putative (DUF1216)
NP_189521.1
  • Protein of unknown function (DUF1216); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28830.1); Has 177545 Blast hits to 90545 proteins in 3397 species: Archae - 691; Bacteria - 36593; Metazoa - 57458; Fungi - 33385; Plants - 8167; Viruses - 3173; Other Eukaryotes - 38078 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    10813224..10815699 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113800.4 → NP_189521.1  transmembrane protein, putative (DUF1216) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189521.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V5U7, A0A654FGT3, Q9LH95
    Conserved Domains (1) summary
    pfam06746
    Location:473 → 581
    DUF1216; Protein of unknown function (DUF1216)
Nucleotide Protein
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