U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822514, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216)
Primary source
TAIR:AT3G28820
Locus tag
AT3G28820
See related
Araport:AT3G28820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (10827647..10829629)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) Neighboring gene mucin-like protein, putative (DUF1216) Neighboring gene hypothetical protein (DUF1216)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_113803.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216)
NP_189524.1
  • Protein of unknown function (DUF1216); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28810.1); Has 16797 Blast hits to 5994 proteins in 897 species: Archae - 34; Bacteria - 3395; Metazoa - 2662; Fungi - 1699; Plants - 295; Viruses - 121; Other Eukaryotes - 8591 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    10827647..10829629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113803.3 → NP_189524.1  mediator of RNA polymerase II transcription subunit-like protein, putative (DUF1216) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189524.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VJJ4, A0A654FBV2, Q9LH92
    Conserved Domains (1) summary
    pfam06746
    Location:301 → 414
    DUF1216; Protein of unknown function (DUF1216)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools