U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

QQS qua-quine starch [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822807, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
QQS
Official Full Name
qua-quine starch
Primary source
TAIR:AT3G30720
Locus tag
AT3G30720
See related
Araport:AT3G30720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
QUA-QUINE STARCH
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See QQS in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (12349047..12349933)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo Neighboring gene glutamine dumper 6

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The QQS orphan gene of Arabidopsis modulates carbon and nitrogen allocation in soybean. Li L, et al. Plant Biotechnol J, 2015 Feb. PMID 25146936, Free PMC Article
  2. Identification of the novel protein QQS as a component of the starch metabolic network in Arabidopsis leaves. Li L, et al. Plant J, 2009 May. PMID 19154206
  3. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Qi M, et al. Plant Biotechnol J, 2019 Jan. PMID 29878511, Free PMC Article
  4. QQS orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions. Li L, et al. Proc Natl Acad Sci U S A, 2015 Nov 24. PMID 26554020, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. expression with its interactor NF-YC4 reduces susceptibility to pathogens and pests
    Title: QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
  2. QQS protein binds to the transcriptional regulator AtNF-YC4 (Arabidopsis nuclear factor Y, subunit C4).
    Title: QQS orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions.
  3. altering QQS expression in Arabidopsis affects carbon partitioning to both starch and protein.
    Title: The QQS orphan gene of Arabidopsis modulates carbon and nitrogen allocation in soybean.
  4. QQS is involved in regulation of starch metabolism.
    Title: Identification of the novel protein QQS as a component of the starch metabolic network in Arabidopsis leaves.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

NM_001339055.1
NM_113975.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within innate immune response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within negative regulation of starch metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of protein metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within starch biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
qua-quine starch
NP_189695.1
  • QUA-QUINE STARCH (QQS); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    12349047..12349933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339054.1 → NP_001326493.1  qua-quine starch [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LPF7, A0A5S9XH55

  2. NM_113975.5 → NP_189695.1  qua-quine starch [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q3E7K4

  3. NM_001339055.1 → NP_001326492.1  qua-quine starch [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LPF7, A0A5S9XH55
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3E7K4.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools