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F-box/RNI-like/FBD-like domains-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823312, updated on 18-Sep-2024

Summary

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Official Full Name
F-box/RNI-like/FBD-like domains-containing protein
Primary source
TAIR:AT3G42770
Locus tag
AT3G42770
See related
Araport:AT3G42770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (14867122..14870083)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Ubiquitin E3 Ligase PRU1 Regulates WRKY6 Degradation to Modulate Phosphate Homeostasis in Response to Low-Pi Stress in Arabidopsis. Ye Q, et al. Plant Cell, 2018 May. PMID 29567663, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables ubiquitin protein ligase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to phosphate starvation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within protein polyubiquitination IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
F-box/RNI-like/FBD-like domains-containing protein
NP_189863.1
  • F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G44060.1); Has 1936 Blast hits to 1850 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 1932; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    14867122..14870083
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114145.1 → NP_189863.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189863.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M190
    UniProtKB/TrEMBL
    A0A5S9XHF9
    Conserved Domains (3) summary
    smart00579
    Location:359 → 425
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:138 → 160
    LRR_2; leucine-rich repeat [structural motif]
    pfam12937
    Location:1 → 34
    F-box-like; F-box-like
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M190.1

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