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Phosphoinositide phosphatase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823397, updated on 18-Sep-2024

Summary

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Official Full Name
Phosphoinositide phosphatase family protein
Primary source
TAIR:AT3G43220
Locus tag
AT3G43220
See related
Araport:AT3G43220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
SAC3; suppressor of actin 3
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Genomic context

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Location:
chromosome: 3
Exon count:
16
Sequence:
Chromosome: 3; NC_003074.8 (15196812..15203139, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ATP binding microtubule motor family protein Neighboring gene RING/FYVE/PHD-type zinc finger family protein Neighboring gene ARID/BRIGHT DNA-binding domain-containing protein Neighboring gene coiled-coil protein (DUF572)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_001161189.1
NM_001339096.1
NM_114190.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Phosphoinositide phosphatase family protein
NP_001154661.1
  • Phosphoinositide phosphatase family protein; FUNCTIONS IN: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: Phosphoinositide phosphatase family protein (TAIR:AT5G20840.1); Has 2101 Blast hits to 1628 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 799; Fungi - 628; Plants - 328; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).
NP_189908.2
  • Phosphoinositide phosphatase family protein; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: Phosphoinositide phosphatase family protein (TAIR:AT5G20840.1); Has 2131 Blast hits to 1660 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 800; Fungi - 658; Plants - 325; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    15196812..15203139 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114190.3 → NP_189908.2  Phosphoinositide phosphatase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189908.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q7XZU2, Q8LPQ2, Q9LXL2
    UniProtKB/TrEMBL
    A0A5S9XHF1
    Conserved Domains (1) summary
    pfam02383
    Location:89 → 387
    Syja_N; SacI homology domain

  2. NM_001339096.1 → NP_001326701.1  Phosphoinositide phosphatase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LQ31, A0A5S9XHF1

  3. NM_001161189.1 → NP_001154661.1  Phosphoinositide phosphatase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154661.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XHF1, F4IXV2
    Conserved Domains (1) summary
    pfam02383
    Location:89 → 387
    Syja_N; SacI homology domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7XZU2.1

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