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Outer membrane OMP85 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823537, updated on 18-Sep-2024

Summary

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Official Full Name
Outer membrane OMP85 family protein
Primary source
TAIR:AT3G44160
Locus tag
AT3G44160
See related
Araport:AT3G44160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
11
Sequence:
Chromosome: 3; NC_003074.8 (15888840..15891988, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene uncharacterized protein Neighboring gene Expp1 protein Neighboring gene plant self-incompatibility protein S1 family protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The outer membrane Omp85-like protein P39 influences metabolic homeostasis in mature Arabidopsis thaliana. Hsueh YC, et al. Plant Biol (Stuttg), 2018 Sep. PMID 29758131
  2. The Omp85-type outer membrane protein p36 of Arabidopsis thaliana evolved by recent gene duplication. Nicolaisen K, et al. J Plant Res, 2015 Mar. PMID 25608613
  3. Chloroplast outer envelope protein P39 in Arabidopsis thaliana belongs to the Omp85 protein family. Hsueh YC, et al. Proteins, 2017 Aug. PMID 25401771
  4. Ubiquitin-dependent chloroplast-associated protein degradation in plants. Ling Q, et al. Science, 2019 Feb 22. PMID 30792274
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. This work identified SP2 (AT3G44160) and CDC48 as functional partners of the SP1 E3 ligase and, in so doing, defined a multicomponent system for chloroplast protein degradation involving integral outer envelope membrane and cytosolic factors.
    Title: Ubiquitin-dependent chloroplast-associated protein degradation in plants.
  2. important, but not essential, for maintenance of metabolic homeostasis
    Title: The outer membrane Omp85-like protein P39 influences metabolic homeostasis in mature Arabidopsis thaliana.
  3. Chloroplast outer envelope protein P39 in Arabidopsis thaliana belongs to the Omp85 protein family.
    Title: Chloroplast outer envelope protein P39 in Arabidopsis thaliana belongs to the Omp85 protein family.
  4. In the Arabidopsis thaliana Toc75-V/Oep80 gene subfamily, two genes don't contain polypeptide transport associated domains, and are annotated as P39 and P36. P36 derives from a very recent gene duplication of P39; it appears to be specific to A. thaliana.
    Title: The Omp85-type outer membrane protein p36 of Arabidopsis thaliana evolved by recent gene duplication.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_114284.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables channel activity IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast outer membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Outer membrane OMP85 family protein
NP_190002.2
  • Outer membrane OMP85 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: outer membrane; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184); BEST Arabidopsis thaliana protein match is: Outer membrane OMP85 family protein (TAIR:AT3G48620.1); Has 794 Blast hits to 794 proteins in 257 species: Archae - 0; Bacteria - 513; Metazoa - 2; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    15888840..15891988 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114284.4 → NP_190002.2  Outer membrane OMP85 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190002.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q5PP51, Q9LXP7
    UniProtKB/TrEMBL
    A0A178VGH2, A0A5S9XHN0, A0A654FCL2
    Conserved Domains (1) summary
    TIGR00992
    Location:92 → 341
    3a0901s03IAP75; chloroplast envelope protein translocase, IAP75 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5PP51.1

Gene LinkOut

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