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hda17 histone deacetylase 17 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823574, updated on 18-Sep-2024

Summary

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Official Symbol
hda17
Official Full Name
histone deacetylase 17
Primary source
TAIR:AT3G44490
Locus tag
AT3G44490
See related
Araport:AT3G44490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
HDA17; histone deacetylase 17
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Genomic context

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See hda17 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (16097479..16098599)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene Low molecular weight phosphotyrosine protein phosphatase Neighboring gene pseudo Neighboring gene alpha/beta-Hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes. Pandey R, et al. Nucleic Acids Res, 2002 Dec 1. PMID 12466527, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_114317.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
  
enables histone deacetylase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
histone deacetylase 17
NP_190035.1
  • histone deacetylase 17 (hda17); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 9 (TAIR:AT3G44680.1); Has 1333 Blast hits to 1333 proteins in 312 species: Archae - 0; Bacteria - 0; Metazoa - 601; Fungi - 334; Plants - 208; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    16097479..16098599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114317.2 → NP_190035.1  histone deacetylase 17 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190035.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LXN8
    UniProtKB/TrEMBL
    A0A654FI66
    Conserved Domains (1) summary
    cl17011
    Location:3 → 116
    Arginase_HDAC; Arginase-like and histone-like hydrolases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LXN8.1

Gene LinkOut

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