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Ribosomal protein S10p/S20e family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823638, updated on 18-Sep-2024

Summary

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Official Full Name
Ribosomal protein S10p/S20e family protein
Primary source
TAIR:AT3G45030
Locus tag
AT3G45030
See related
Araport:AT3G45030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (16471361..16472409, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene SNF7 family protein Neighboring gene serine carboxypeptidase-like 48 Neighboring gene Ribosomal L18p/L5e family protein Neighboring gene phosphatidate cytidylyltransferase family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
  2. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
  3. Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings. Igawa T, et al. J Exp Bot, 2009. PMID 19429840, Free PMC Article
  4. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
  5. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_114372.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
NOT located_in Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
part_of cytosolic small ribosomal subunit HDA PubMed 

General protein information

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Preferred Names
Ribosomal protein S10p/S20e family protein
NP_190089.2
  • Ribosomal protein S10p/S20e family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, small ribosomal subunit; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Ribosomal protein S10, conserved site (InterPro:IPR018268), Ribosomal protein S10, eukaryotic/archaeal (InterPro:IPR005729), Ribosomal protein S10 (InterPro:IPR001848); BEST Arabidopsis thaliana protein match is: Ribosomal protein S10p/S20e family protein (TAIR:AT5G62300.2); Has 7518 Blast hits to 7518 proteins in 2618 species: Archae - 271; Bacteria - 4774; Metazoa - 380; Fungi - 145; Plants - 182; Viruses - 0; Other Eukaryotes - 1766 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    16471361..16472409 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114372.6 → NP_190089.2  Ribosomal protein S10p/S20e family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190089.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P49200, Q42168, Q9FPI1, Q9LDG8
    UniProtKB/TrEMBL
    A0A178V9U8, A0A5S9YG97, Q8H189
    Conserved Domains (1) summary
    cl00314
    Location:9 → 121
    Ribosomal_S10; Ribosomal protein S10p/S20e
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P49200.2

Gene LinkOut

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Molecular Biology Databases
Research Materials