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RING/U-box protein with C6HC-type zinc finger [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823695, updated on 18-Sep-2024

Summary

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Official Full Name
RING/U-box protein with C6HC-type zinc finger
Primary source
TAIR:AT3G45540
Locus tag
AT3G45540
See related
Araport:AT3G45540
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (16706312..16707649, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene RING/U-box protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/U-box protein with C6HC-type zinc finger
NP_190140.1
  • RING/U-box protein with C6HC-type zinc finger; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 2900 Blast hits to 2879 proteins in 213 species: Archae - 0; Bacteria - 2; Metazoa - 1213; Fungi - 549; Plants - 696; Viruses - 0; Other Eukaryotes - 440 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    16706312..16707649 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114423.1 → NP_190140.1  RING/U-box protein with C6HC-type zinc finger [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190140.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XI86, Q9M1F3
    Conserved Domains (2) summary
    smart00647
    Location:168 → 235
    IBR; In Between Ring fingers
    pfam01485
    Location:253 → 296
    IBR; IBR domain, a half RING-finger domain

  2. NM_001339210.1 → NP_001325919.1  RING/U-box protein with C6HC-type zinc finger [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LMP3
Nucleotide Protein
Heading Accession and Version

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