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UPSTREAM OF FLC-like protein (DUF966) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823754, updated on 18-Sep-2024

Summary

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Official Full Name
UPSTREAM OF FLC-like protein (DUF966)
Primary source
TAIR:AT3G46110
Locus tag
AT3G46110
See related
Araport:AT3G46110
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (16931991..16933909)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene C2H2 and C2HC zinc fingers superfamily protein Neighboring gene Histidyl-tRNA synthetase 1 Neighboring gene purple acid phosphatase 19 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization the role of a UFC homolog, AtAuxRP3, in the regulation of Arabidopsis seedling growth and stress response. Shen L, et al. J Plant Physiol, 2019 Sep. PMID 31207460
  2. A SOSEKI-based coordinate system interprets global polarity cues in Arabidopsis. Yoshida S, et al. Nat Plants, 2019 Feb. PMID 30737509, Free PMC Article
  3. DIX Domain Polymerization Drives Assembly of Plant Cell Polarity Complexes. van Dop M, et al. Cell, 2020 Feb 6. PMID 32004461, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_114480.4
NM_202660.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in inflorescence development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in plant organ morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein polymerization IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of auxin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of auxin mediated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of cell division IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of leaf development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of root morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to osmotic stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to salt IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in specification of plant organ axis polarity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
UPSTREAM OF FLC-like protein (DUF966)
NP_190197.2
  • LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 195 Blast hits to 168 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_974389.1
  • LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031043 (InterPro:IPR021182), Protein of unknown function DUF966 (InterPro:IPR010369); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    16931991..16933909
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339234.1 → NP_001325459.1  UPSTREAM OF FLC-like protein (DUF966) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VC19, A0A1I9LLA9

  2. NM_202660.2 → NP_974389.1  UPSTREAM OF FLC-like protein (DUF966) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974389.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VE20
    Conserved Domains (1) summary
    pfam06136
    Location:20 → 311
    DUF966; Domain of unknown function (DUF966)

  3. NM_114480.4 → NP_190197.2  UPSTREAM OF FLC-like protein (DUF966) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190197.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4J7X6, Q8GY65, Q9LX84
    UniProtKB/TrEMBL
    A0A178VC19, A0A654FI85
    Conserved Domains (1) summary
    pfam06136
    Location:20 → 313
    DUF966; Domain of unknown function (DUF966)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GY65.1

Gene LinkOut

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