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Regulator of chromosome condensation (RCC1) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 823920, updated on 18-Sep-2024

Summary

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Official Full Name
Regulator of chromosome condensation (RCC1) family protein
Primary source
TAIR:AT3G47660
Locus tag
AT3G47660
See related
Araport:AT3G47660
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (17570696..17574805)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene DnaJ/Hsp40 cysteine-rich domain superfamily protein Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene ncRNA Neighboring gene ternary complex factor MIP1 leucine-zipper protein Neighboring gene DNA binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NM_001339327.1
NM_001339328.1
NM_001339329.1
NM_114634.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  
is_active_in cellular_component ND
No biological Data available
more info
  
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Regulator of chromosome condensation (RCC1) family protein
NP_190350.4
  • Regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G19420.1); Has 18978 Blast hits to 7605 proteins in 414 species: Archae - 65; Bacteria - 1839; Metazoa - 7882; Fungi - 907; Plants - 2582; Viruses - 3; Other Eukaryotes - 5700 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    17570696..17574805
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339324.1 → NP_001325561.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LLL7, A0A5S9XJI1

  2. NM_001339325.1 → NP_001325560.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XJI1, A0A654FDV7, Q9SN72
    Conserved Domains (3) summary
    smart00064
    Location:634 → 699
    FYVE; Protein present in Fab1, YOTB, Vac1, and EEA1
    COG5184
    Location:254 → 633
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    cd13365
    Location:12 → 119
    PH_PLC_plant-like; Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain

  3. NM_001339326.1 → NP_001325559.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LLL5, A0A5S9XJI1

  4. NM_114634.4 → NP_190350.4  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190350.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XJI1, F4JCN3
    Conserved Domains (4) summary
    cd13365
    Location:15 → 122
    PH_PLC_plant-like; Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain
    pfam00415
    Location:424 → 473
    RCC1; Regulator of chromosome condensation (RCC1) repeat
    pfam01363
    Location:641 → 701
    FYVE; FYVE zinc finger
    pfam13540
    Location:566 → 595
    RCC1_2; Regulator of chromosome condensation (RCC1) repeat

  5. NM_001339327.1 → NP_001325562.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XJI1, A0A654FDV7, Q9SN72
    Conserved Domains (3) summary
    smart00064
    Location:634 → 699
    FYVE; Protein present in Fab1, YOTB, Vac1, and EEA1
    COG5184
    Location:254 → 633
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    cd13365
    Location:12 → 119
    PH_PLC_plant-like; Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain

  6. NM_001339328.1 → NP_001325558.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LLL4, A0A5S9XJI1

  7. NM_001339329.1 → NP_001325557.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LLL3, A0A5S9XJI1
Nucleotide Protein
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