U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ATP/DNA binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824038, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
ATP/DNA binding protein
Primary source
TAIR:AT3G48770
Locus tag
AT3G48770
See related
Araport:AT3G48770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (18078452..18087414, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene cell division control 2 Neighboring gene DHHC-type zinc finger family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene serine palmitoyltransferase 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_001339378.1
NM_114736.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
ATP/DNA binding protein
NP_001319711.1
  • DNA binding;ATP binding; FUNCTIONS IN: DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, BED-type predicted (InterPro:IPR003656), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28020.1); Has 779 Blast hits to 661 proteins in 171 species: Archae - 6; Bacteria - 159; Metazoa - 152; Fungi - 67; Plants - 310; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    18078452..18087414 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339378.1 → NP_001319711.1  ATP/DNA binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FE72, Q9M305

  2. NM_114736.3 → NP_190446.1  ATP/DNA binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190446.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FE72, Q9M305
    Conserved Domains (1) summary
    pfam02892
    Location:27 → 76
    zf-BED; BED zinc finger
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools