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Cysteine proteinases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824096, updated on 18-Sep-2024

Summary

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Official Full Name
Cysteine proteinases superfamily protein
Primary source
TAIR:AT3G49340
Locus tag
AT3G49340
See related
Araport:AT3G49340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (18293173..18294621, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Metal-dependent protein hydrolase Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene 6-phosphogluconolactonase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. XYLEM CYSTEINE PEPTIDASE 1 and its inhibitor CYSTATIN 6 regulate pattern-triggered immunity by modulating the stability of the NADPH oxidase RESPIRATORY BURST OXIDASE HOMOLOG D. Liu Y, et al. Plant Cell, 2024 Jan 30. PMID 37820743, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_114794.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within proteolysis ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Cysteine proteinases superfamily protein
NP_566920.1
  • Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT2G27420.1); Has 7805 Blast hits to 7737 proteins in 710 species: Archae - 57; Bacteria - 222; Metazoa - 3269; Fungi - 4; Plants - 1892; Viruses - 135; Other Eukaryotes - 2226 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    18293173..18294621 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_114794.2 → NP_566920.1  Cysteine proteinases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566920.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XJ81, A0A654FFJ9, A0A7G2ESN7, Q9SG15
    Conserved Domains (2) summary
    pfam00112
    Location:129 → 340
    Peptidase_C1; Papain family cysteine protease
    pfam08246
    Location:35 → 92
    Inhibitor_I29; Cathepsin propeptide inhibitor domain (I29)
Nucleotide Protein
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