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Senescence/dehydration-associated protein-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824288, updated on 18-Sep-2024

Summary

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Official Full Name
Senescence/dehydration-associated protein-like protein
Primary source
TAIR:AT3G51250
Locus tag
AT3G51250
See related
Araport:AT3G51250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (19028106..19030676)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene chalcone-flavanone isomerase family protein Neighboring gene ncRNA Neighboring gene flavanone 3-hydroxylase Neighboring gene 20S proteasome alpha subunit PAD1 Neighboring gene tRNA-Asp

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_114984.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Senescence/dehydration-associated protein-like protein
NP_190693.1
  • Senescence/dehydration-associated protein-related; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT2G17840.1); Has 288 Blast hits to 288 proteins in 88 species: Archae - 0; Bacteria - 8; Metazoa - 87; Fungi - 46; Plants - 136; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19028106..19030676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339495.1 → NP_001325934.1  Senescence/dehydration-associated protein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VI44, A0A1I9LMR0, A0A654FET5

  2. NM_114984.3 → NP_190693.1  Senescence/dehydration-associated protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190693.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SD22
    UniProtKB/TrEMBL
    A0A178VI44, A0A5S9XLH1, A0A654FET5
    Conserved Domains (1) summary
    pfam06911
    Location:269 → 437
    Senescence; Senescence-associated protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SD22.1

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