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YLS2 Calcium-dependent phosphotriesterase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824306, updated on 18-Sep-2024

Summary

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Official Symbol
YLS2
Official Full Name
Calcium-dependent phosphotriesterase superfamily protein
Primary source
TAIR:AT3G51430
Locus tag
AT3G51430
See related
Araport:AT3G51430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
SSL5; STRICTOSIDINE SYNTHASE-LIKE 5; YELLOW-LEAF-SPECIFIC GENE 2
Summary
Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.
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Genomic context

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See YLS2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (19086344..19088150)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF241) Neighboring gene strictosidine synthase-like 4 Neighboring gene Calcium-dependent phosphotriesterase superfamily protein Neighboring gene Calcium-dependent phosphotriesterase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic and transcriptional analysis of a strictosidine synthase-like gene family in Arabidopsis thaliana reveals involvement in plant defence responses. Sohani MM, et al. Plant Biol (Stuttg), 2009 Jan. PMID 19121120
  2. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
  3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001203124.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables strictosidine synthase activity IEA
Inferred from Electronic Annotation
more info
  
NOT enables strictosidine synthase activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in response to ethylene IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to fungus IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to jasmonic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to salicylic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to virus IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in endoplasmic reticulum HDA PubMed 

General protein information

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Preferred Names
Calcium-dependent phosphotriesterase superfamily protein
NP_001190053.1
  • YELLOW-LEAF-SPECIFIC GENE 2 (YLS2); CONTAINS InterPro DOMAIN/s: Strictosidine synthase (InterPro:IPR004141), Strictosidine synthase, conserved region (InterPro:IPR018119), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT3G51440.1).
NP_566951.1
  • YELLOW-LEAF-SPECIFIC GENE 2 (YLS2); FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: response to ethylene stimulus, leaf senescence, alkaloid biosynthetic process, response to abscisic acid stimulus; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT3G51440.1); Has 1475 Blast hits to 1462 proteins in 362 species: Archae - 36; Bacteria - 561; Metazoa - 225; Fungi - 12; Plants - 456; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19086344..19088150
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115002.4 → NP_566951.1  Calcium-dependent phosphotriesterase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566951.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9CAZ7, Q9SD06
    UniProtKB/TrEMBL
    A0A178VMI5, A0A5S9XJT8
    Conserved Domains (2) summary
    COG3386
    Location:70 → 299
    YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
    pfam03088
    Location:161 → 248
    Str_synth; Strictosidine synthase

  2. NM_001203124.1 → NP_001190053.1  Calcium-dependent phosphotriesterase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190053.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J3D0
    Conserved Domains (5) summary
    COG3386
    Location:70 → 297
    YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
    cd05819
    Location:70 → 114
    NHL; NHL repeat [structural motif]
    pfam03088
    Location:161 → 248
    Str_synth; Strictosidine synthase
    cl08224
    Location:250 → 354
    PsaA_PsaB; Photosystem I psaA/psaB protein
    cl18310
    Location:67 → 193
    NHL; NHL repeat unit of beta-propeller proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CAZ7.1

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