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LTP5 lipid transfer protein 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824323, updated on 18-Sep-2024

Summary

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Official Symbol
LTP5
Official Full Name
lipid transfer protein 5
Primary source
TAIR:AT3G51600
Locus tag
AT3G51600
See related
Araport:AT3G51600
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
lipid transfer protein 5; T18N14.5
Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
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Genomic context

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See LTP5 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (19138338..19139423, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene lipid transfer protein 12 Neighboring gene ATP-dependent helicase/deoxyribonuclease subunit B Neighboring gene PAP/OAS1 substrate-binding domain superfamily

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A gain-of-function mutation of Arabidopsis lipid transfer protein 5 disturbs pollen tube tip growth and fertilization. Chae K, et al. Plant Cell, 2009 Dec. PMID 20044438, Free PMC Article
  2. Lipid transfer proteins are encoded by a small multigene family in Arabidopsis thaliana. Arondel12 V V, et al. Plant Sci, 2000 Aug 8. PMID 10940464
  3. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128
  4. Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings. Igawa T, et al. J Exp Bot, 2009. PMID 19429840, Free PMC Article
  5. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LTP5, a small secreted peptide from both pollen and the pistil, plays a role in pollen tube tip growth and in pistil function.
    Title: A gain-of-function mutation of Arabidopsis lipid transfer protein 5 disturbs pollen tube tip growth and fertilization.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_115019.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables lipid transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid transport ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
lipid transfer protein 5
NP_190728.1
  • lipid transfer protein 5 (LTP5); FUNCTIONS IN: lipid transporter activity; INVOLVED IN: lipid transport; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 1 (TAIR:AT2G38540.1); Has 1074 Blast hits to 1073 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1070; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19138338..19139423 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115019.3 → NP_190728.1  lipid transfer protein 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190728.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q42005, Q8L966, Q9XFS7
    UniProtKB/TrEMBL
    A0A178VLH1, A0A5S9XK75
    Conserved Domains (1) summary
    cd01960
    Location:27 → 115
    nsLTP1; Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9XFS7.1

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