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UPL7 ubiquitin-protein ligase 7 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824475, updated on 18-Sep-2024

Summary

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Official Symbol
UPL7
Official Full Name
ubiquitin-protein ligase 7
Primary source
TAIR:AT3G53090
Locus tag
AT3G53090
See related
Araport:AT3G53090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ubiquitin-protein ligase 7
Summary
encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.
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Genomic context

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See UPL7 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Sequence:
Chromosome: 3; NC_003074.8 (19679177..19685360)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene D-galactoside/L-rhamnose binding SUEL lectin protein Neighboring gene D-galactoside/L-rhamnose binding SUEL lectin protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Modifier of rudimentary (Mod(r)) protein Neighboring gene Cytochrome P450 superfamily protein Neighboring gene O-methyltransferase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The HECT ubiquitin-protein ligase (UPL) family in Arabidopsis: UPL3 has a specific role in trichome development. Downes BP, et al. Plant J, 2003 Sep. PMID 12969426
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001035773.2
NM_115169.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein ubiquitination ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
part_of ubiquitin ligase complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-protein ligase 7
NP_001030850.1
  • ubiquitin-protein ligase 7 (UPL7); CONTAINS InterPro DOMAIN/s: HECT (InterPro:IPR000569), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ubiquitin protein ligase 6 (TAIR:AT3G17205.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_190877.1
  • ubiquitin-protein ligase 7 (UPL7); CONTAINS InterPro DOMAIN/s: HECT (InterPro:IPR000569), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ubiquitin protein ligase 6 (TAIR:AT3G17205.3); Has 4481 Blast hits to 4316 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 2549; Fungi - 797; Plants - 365; Viruses - 0; Other Eukaryotes - 770 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19679177..19685360
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115169.3 → NP_190877.1  ubiquitin-protein ligase 7 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190877.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WUM3, Q9SCQ2
    UniProtKB/TrEMBL
    A0A7G2EWA1
    Conserved Domains (2) summary
    smart00119
    Location:799 → 1139
    HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
    cd00078
    Location:774 → 1140
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  2. NM_001035773.2 → NP_001030850.1  ubiquitin-protein ligase 7 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030850.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WUM3, Q9SCQ2
    UniProtKB/TrEMBL
    A0A7G2EWA1
    Conserved Domains (2) summary
    smart00119
    Location:799 → 1139
    HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
    cd00078
    Location:774 → 1140
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SCQ2.1

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