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Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824494, updated on 18-Sep-2024

Summary

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Official Full Name
Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
Primary source
TAIR:AT3G53270
Locus tag
AT3G53270
See related
Araport:AT3G53270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (19750047..19753280, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene phenylalanine ammonia-lyase 2 Neighboring gene cytochrome p450 71b5 Neighboring gene cytochrome P450, family 71, subfamily B, polypeptide 30 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001084807.2
NM_001203147.1
NM_001339605.1
NM_001339606.1
NM_001339607.1
NM_115187.2
NM_180358.1
NM_180359.2
NM_202693.2

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
NP_001078276.1
  • Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small nuclear RNA activating complex (SNAPc), subunit SNAP43 (InterPro:IPR019188); Has 91 Blast hits to 91 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 48; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
NP_001190076.1
  • Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small nuclear RNA activating complex (SNAPc), subunit SNAP43 (InterPro:IPR019188).
NP_566983.1
  • Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; CONTAINS InterPro DOMAIN/s: Small nuclear RNA activating complex (SNAPc), subunit SNAP43 (InterPro:IPR019188); Has 91 Blast hits to 91 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 48; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
NP_850689.1
  • Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; CONTAINS InterPro DOMAIN/s: Small nuclear RNA activating complex (SNAPc), subunit SNAP43 (InterPro:IPR019188); Has 91 Blast hits to 91 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 48; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
NP_850690.1
  • Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; CONTAINS InterPro DOMAIN/s: Small nuclear RNA activating complex (SNAPc), subunit SNAP43 (InterPro:IPR019188); Has 91 Blast hits to 91 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 48; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
NP_974422.1
  • Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; CONTAINS InterPro DOMAIN/s: Small nuclear RNA activating complex (SNAPc), subunit SNAP43 (InterPro:IPR019188); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19750047..19753280 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180359.2 → NP_850690.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850690.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFE0, A0A384LN59, A0A654FGA6, Q8RXK3
    Conserved Domains (1) summary
    pfam09808
    Location:6 → 199
    SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

  2. NM_202693.2 → NP_974422.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974422.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFE0, A0A384LN59, A0A654FGA6, Q8RXK3
    Conserved Domains (1) summary
    pfam09808
    Location:6 → 199
    SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

  3. NM_180358.1 → NP_850689.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850689.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFE0, A0A384LN59, A0A654FGA6, Q8RXK3
    Conserved Domains (1) summary
    pfam09808
    Location:6 → 199
    SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

  4. NM_115187.2 → NP_566983.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566983.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFE0, A0A384LN59, A0A654FGA6, Q8RXK3
    Conserved Domains (1) summary
    pfam09808
    Location:6 → 199
    SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

  5. NM_001339605.1 → NP_001326731.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFE0, A0A384LN59, A0A654FGA6, Q8RXK3
    Conserved Domains (1) summary
    pfam09808
    Location:6 → 199
    SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

  6. NM_001084807.2 → NP_001078276.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078276.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFE0, A0A384LN59, A0A654FGA6, Q8RXK3
    Conserved Domains (1) summary
    pfam09808
    Location:6 → 199
    SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

  7. NM_001339606.1 → NP_001326729.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFE0, A0A384LN59, A0A654FGA6, Q8RXK3
    Conserved Domains (1) summary
    pfam09808
    Location:6 → 199
    SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

  8. NM_001339607.1 → NP_001326730.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFE0, A0A384LN59, A0A654FGA6, Q8RXK3
    Conserved Domains (1) summary
    pfam09808
    Location:6 → 199
    SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

  9. NM_001203147.1 → NP_001190076.1  Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190076.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FGA6, F4J9B1
    Conserved Domains (1) summary
    pfam09808
    Location:6 → 199
    SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43
Nucleotide Protein
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