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CP29 chloroplast RNA-binding protein 29 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824514, updated on 18-Sep-2024

Summary

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Official Symbol
CP29
Official Full Name
chloroplast RNA-binding protein 29
Primary source
TAIR:AT3G53460
Locus tag
AT3G53460
See related
Araport:AT3G53460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
chloroplast RNA-binding protein 29
Summary
Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast.
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Genomic context

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See CP29 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (19818975..19821519, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Putative lysine decarboxylase family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Neighboring gene pleiotropic drug resistance 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of a pigment cluster catalysing fast photoprotective quenching response in CP29. Guardini Z, et al. Nat Plants, 2020 Mar. PMID 32170280
  2. Band shape heterogeneity of the low-energy chlorophylls of CP29: absence of mixed binding sites and excitonic interactions. Belgio E, et al. Biochemistry, 2010 Feb 9. PMID 20047285
  3. Zeaxanthin radical cation formation in minor light-harvesting complexes of higher plant antenna. Avenson TJ, et al. J Biol Chem, 2008 Feb 8. PMID 17991753
  4. Combinatory actions of CP29 phosphorylation by STN7 and stability regulate leaf age-dependent disassembly of photosynthetic complexes. Poudyal RS, et al. Sci Rep, 2020 Jun 24. PMID 32581255, Free PMC Article
  5. High light induced disassembly of photosystem II supercomplexes in Arabidopsis requires STN7-dependent phosphorylation of CP29. Fristedt R, et al. PLoS One, 2011. PMID 21915352, Free PMC Article

See all (22) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Combinatory actions of CP29 phosphorylation by STN7 and stability regulate leaf age-dependent disassembly of photosynthetic complexes.
    Title: Combinatory actions of CP29 phosphorylation by STN7 and stability regulate leaf age-dependent disassembly of photosynthetic complexes.
  2. Identification of a pigment cluster catalysing fast photoprotective quenching response in CP29.
    Title: Identification of a pigment cluster catalysing fast photoprotective quenching response in CP29.
  3. Data indicate that minor light-harvesting complexes (Lhcs) CP24, CP26 and CP29 are crucial for the functioning and macro-organization of photosystem II.
    Title: Disturbed excitation energy transfer in Arabidopsis thaliana mutants lacking minor antenna complexes of photosystem II.
  4. CP31A and CP29A associate with large, overlapping sets of chloroplast transcripts.
    Title: Arabidopsis chloroplast RNA binding proteins CP31A and CP29A associate with large transcript pools and confer cold stress tolerance by influencing multiple chloroplast RNA processing steps.
  5. High light induced disassembly of photosystem II supercomplexes in Arabidopsis requires STN7-dependent phosphorylation of CP29.
    Title: High light induced disassembly of photosystem II supercomplexes in Arabidopsis requires STN7-dependent phosphorylation of CP29.
  6. Within the red absorbing antenna chlorophylls (chls) of a single chl-protein complex in photosystem II antenna complex CP29, a marked spectral band shape heterogeneity exists, wherein no evidence of significantly strong excitonic interactions is found.
    Title: Band shape heterogeneity of the low-energy chlorophylls of CP29: absence of mixed binding sites and excitonic interactions.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001203150.1
NM_180361.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables poly(U) RNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within RNA splicing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within RNA stabilization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in RNA stabilization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cold acclimation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in cold acclimation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to cold IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 
located_in chloroplast stroma IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast thylakoid HDA PubMed 
located_in cytosol HDA PubMed 
located_in thylakoid HDA PubMed 
located_in thylakoid IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
chloroplast RNA-binding protein 29
NP_001190078.1
  • chloroplast RNA-binding protein 29 (CP29); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G37220.1).
NP_001190079.1
  • chloroplast RNA-binding protein 29 (CP29); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G37220.1).
NP_190914.1
  • chloroplast RNA-binding protein 29 (CP29); FUNCTIONS IN: RNA binding, poly(U) RNA binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G37220.1); Has 992946 Blast hits to 485878 proteins in 21699 species: Archae - 20986; Bacteria - 587269; Metazoa - 197754; Fungi - 28530; Plants - 64033; Viruses - 69323; Other Eukaryotes - 25051 (source: NCBI BLink).
NP_850692.2
  • chloroplast RNA-binding protein 29 (CP29); FUNCTIONS IN: RNA binding, poly(U) RNA binding; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G37220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19818975..19821519 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115206.3 → NP_190914.1  chloroplast RNA-binding protein 29 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190914.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q43349, Q94BT1, Q9LFH2
    UniProtKB/TrEMBL
    A0A178VFP8, A0A5S9XKG3, A0A654FIG3
    Conserved Domains (2) summary
    cd21608
    Location:258 → 333
    RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins
    cl17169
    Location:100 → 178
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. NM_001203149.1 → NP_001190078.1  chloroplast RNA-binding protein 29 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190078.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q43349, Q94BT1, Q9LFH2
    UniProtKB/TrEMBL
    A0A178VFP8, A0A5S9XKG3, A0A654FIG3
    Conserved Domains (2) summary
    cd21608
    Location:258 → 333
    RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins
    cl17169
    Location:100 → 178
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. NM_001203150.1 → NP_001190079.1  chloroplast RNA-binding protein 29 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190079.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFP8, F4JAF3
    Conserved Domains (2) summary
    cd12399
    Location:279 → 355
    RRM_HP0827_like; RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins
    cl17169
    Location:100 → 194
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. NM_180361.2 → NP_850692.2  chloroplast RNA-binding protein 29 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850692.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q43349, Q94BT1, Q9LFH2
    UniProtKB/TrEMBL
    A0A178VFP8, A0A5S9XKG3, A0A654FIG3
    Conserved Domains (2) summary
    cd21608
    Location:258 → 333
    RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins
    cl17169
    Location:100 → 178
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q43349.2

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