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ABCG20 ABC-2 type transporter family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824519, updated on 18-Sep-2024

Summary

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Official Symbol
ABCG20
Official Full Name
ABC-2 type transporter family protein
Primary source
TAIR:AT3G53510
Locus tag
AT3G53510
See related
Araport:AT3G53510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATP-binding cassette G20
Summary
Belongs to a clade of five Arabidopsis thaliana ABCG half-transporters that are required for synthesis of an effective suberin barrier in roots and seed coats (ABCG2, ABCG6, and ABCG20) and for synthesis of an intact pollen wall (ABCG1 and ABCG16).
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Genomic context

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See ABCG20 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (19837148..19839983, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pleiotropic drug resistance 9 Neighboring gene valine-tRNA ligase Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein Neighboring gene UDP-glucuronic acid decarboxylase 1 Neighboring gene ncRNA Neighboring gene Chloroplast-targeted copper chaperone protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Importers Drive Leaf-to-Leaf Jasmonic Acid Transmission in Wound-Induced Systemic Immunity. Li M, et al. Mol Plant, 2020 Oct 5. PMID 32889174
  2. ABCG transporters are required for suberin and pollen wall extracellular barriers in Arabidopsis. Yadav V, et al. Plant Cell, 2014 Sep. PMID 25217507, Free PMC Article
  3. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
  4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_115211.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATPase-coupled transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within organic acid transmembrane transport IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within suberin biosynthetic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ABC-2 type transporter family protein
NP_190919.1
  • ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Pigment precursor permease (InterPro:IPR005284), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT2G37360.1); Has 392871 Blast hits to 356829 proteins in 4146 species: Archae - 6979; Bacteria - 312762; Metazoa - 8946; Fungi - 6247; Plants - 5690; Viruses - 12; Other Eukaryotes - 52235 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19837148..19839983 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115211.5 → NP_190919.1  ABC-2 type transporter family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190919.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LFG8
    UniProtKB/TrEMBL
    A0A178VKT6
    Conserved Domains (1) summary
    TIGR00955
    Location:120 → 738
    3a01204; The Eye Pigment Precursor Transporter (EPP) Family protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LFG8.1

Gene LinkOut

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