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TRM19 afadin [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824522, updated on 18-Sep-2024

Summary

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Official Symbol
TRM19
Official Full Name
afadin
Primary source
TAIR:AT3G53540
Locus tag
AT3G53540
See related
Araport:AT3G53540
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
TON1 Recruiting Motif 19
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Genomic context

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See TRM19 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (19846647..19851045, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene UDP-glucuronic acid decarboxylase 1 Neighboring gene ncRNA Neighboring gene Chloroplast-targeted copper chaperone protein Neighboring gene FBD-like domain family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene serine/threonine-protein kinase AFC1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001339620.1
NM_115214.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
afadin
NP_190922.3
  • unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in 206 species: Archae - 2; Bacteria - 409; Metazoa - 304; Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19846647..19851045 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115214.5 → NP_190922.3  afadin [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190922.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VEW1, A0A384KEG2, A0A5S9XKL0, A0A654FFG2, F4JAG7
    Conserved Domains (3) summary
    pfam12552
    Location:171 → 215
    DUF3741; Protein of unknown function (DUF3741)
    pfam14309
    Location:778 → 917
    DUF4378; Domain of unknown function (DUF4378)
    pfam14383
    Location:81 → 101
    VARLMGL; DUF761-associated sequence motif

  2. NM_001339620.1 → NP_001326389.1  afadin [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LP47, Q9LFG5
Nucleotide Protein
Heading Accession and Version

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