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MICPUN_108808 predicted protein [ Micromonas commoda ]

Gene ID: 8245644, updated on 16-Nov-2023

Summary

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Gene symbol
MICPUN_108808
Gene description
predicted protein
Locus tag
MICPUN_108808
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Micromonas commoda (strain: RCC299)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Genomic context

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See MICPUN_108808 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
1
Sequence:
Chromosome: 8; NC_013045.1 (1019010..1020652, complement)

Chromosome 8 - NC_013045.1Genomic Context describing neighboring genes Neighboring gene predicted protein Neighboring gene predicted protein Neighboring gene alpha tubulin 2 Neighboring gene predicted protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013045.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Worden AZ, et al. Science, 2009 Apr 10. PMID 19359590
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
predicted protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013045.1 Reference assembly

    Range
    1019010..1020652 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002508250.1 → XP_002508296.1  predicted protein [Micromonas commoda]

    See identical proteins and their annotated locations for XP_002508296.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C1FGJ0
    Conserved Domains (3) summary
    cd02961
    Location:170 → 283
    PDI_a_family; Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI ...
    pfam07970
    Location:308 → 488
    COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
    pfam13850
    Location:9 → 96
    ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Nucleotide Protein
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