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SUA suppressor of abi3-5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824590, updated on 18-Sep-2024

Summary

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Official Symbol
SUA
Official Full Name
suppressor of abi3-5
Primary source
TAIR:AT3G54230
Locus tag
AT3G54230
See related
Araport:AT3G54230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
suppressor of abi3-5
Summary
Encodes a splicing factor SUA (suppressor of abi3-5), homologous to the human protein RBM5. Controls alternative splicing of the developmental regulator ABI3.
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Genomic context

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See SUA in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Sequence:
Chromosome: 3; NC_003074.8 (20073028..20080384)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L17 family protein Neighboring gene GRAS family transcription factor Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene GHMP kinase family protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 36

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The conserved splicing factor SUA controls alternative splicing of the developmental regulator ABI3 in Arabidopsis. Sugliani M, et al. Plant Cell, 2010 Jun. PMID 20525852, Free PMC Article
  2. Splicing of receptor-like kinase-encoding SNC4 and CERK1 is regulated by two conserved splicing factors that are required for plant immunity. Zhang Z, et al. Mol Plant, 2014 Dec. PMID 25267732, Free PMC Article
  3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SUPPRESSOR OF ABI3-5 is a novel plant splicing factor that influences seed maturation by controlling alternative splicing of ABI3.
    Title: The conserved splicing factor SUA controls alternative splicing of the developmental regulator ABI3 in Arabidopsis.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

NM_001203155.1
NM_115283.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within mRNA splicing, via spliceosome IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of RNA splicing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
suppressor of abi3-5
NP_001190084.1
  • suppressor of abi3-5 (SUA); FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), D111/G-patch (InterPro:IPR000467), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2).
NP_190991.2
  • suppressor of abi3-5 (SUA); FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), D111/G-patch (InterPro:IPR000467), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2); Has 996294 Blast hits to 498601 proteins in 22091 species: Archae - 21896; Bacteria - 611740; Metazoa - 183692; Fungi - 26269; Plants - 56661; Viruses - 72133; Other Eukaryotes - 23903 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20073028..20080384
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339653.1 → NP_001325865.1  suppressor of abi3-5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VGN6, A0A1I9LMI6

  2. NM_001339654.1 → NP_001325863.1  suppressor of abi3-5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VF55, A0A1I9LMI4

  3. NM_001339655.1 → NP_001325864.1  suppressor of abi3-5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D5L2Y2, F4JCU0, Q8VYR8, Q9M383
    UniProtKB/TrEMBL
    A0A654FGJ9

  4. NM_115283.3 → NP_190991.2  suppressor of abi3-5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190991.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    D5L2Y2, F4JCU0, Q8VYR8, Q9M383
    UniProtKB/TrEMBL
    A0A654FGJ9
    Conserved Domains (6) summary
    PHA02896
    Location:74 → 219
    PHA02896; A-type inclusion like protein; Provisional
    smart00443
    Location:926 → 970
    G_patch; glycine rich nucleic binding domain
    smart00547
    Location:381 → 404
    ZnF_RBZ; Zinc finger domain
    cd12313
    Location:430 → 510
    RRM1_RRM2_RBM5_like; RNA recognition motif 1 and 2 in RNA-binding protein 5 (RBM5) and similar proteins
    sd00029
    Location:382 → 401
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    cd16166
    Location:578 → 630
    OCRE_SUA_like; OCRE domain found in Suppressor of ABI3-5 (SUA) and similar proteins

  5. NM_001203155.1 → NP_001190084.1  suppressor of abi3-5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190084.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FGJ9
    Conserved Domains (6) summary
    PHA02896
    Location:74 → 219
    PHA02896; A-type inclusion like protein; Provisional
    smart00443
    Location:927 → 971
    G_patch; glycine rich nucleic binding domain
    smart00547
    Location:382 → 405
    ZnF_RBZ; Zinc finger domain
    cd12313
    Location:431 → 511
    RRM1_RRM2_RBM5_like; RNA recognition motif 1 and 2 in RNA-binding protein 5 (RBM5) and similar proteins
    sd00029
    Location:383 → 402
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    cd16166
    Location:579 → 631
    OCRE_SUA_like; OCRE domain found in Suppressor of ABI3-5 (SUA) and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4JCU0.2

Gene LinkOut

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